Publications of 2011
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Ned Van Eps, Anita M. Preininger, Nathan Alexander, Ali I. Kaya, Scott Meier, Jens Meiler, Heidi E. Hamm, and Wayne L. Hubbell
Interaction of a G protein with an activated receptor opens the interdomain interface in the alpha subunit
PNAS
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Andrew Morin, Jens Meiler, Laura Mizoue
Computational design of protein-ligand interfaces: Potential in Therapeutic Development.
Trends in Biotechnology
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Fortenberry C, Bowman EA, Proffitt W, Dorr B, Combs S, Harp J, Mizoue L, Meiler J
Exploring Symmetry as an Avenue to the Computational Design of Large Protein Domains
J. Am. Chem. Soc.
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Soumya Ganguly, Brian E. Weiner, Jens Meiler
Membrane Protein Structure Determination using Paramagnetic Tags
Structure
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Olmsted IR, Xiao Y, Cho M, Csordas AT, Sheehan JH, Meiler J, Soh HT, Bornhop DJ.
Measurement of Aptamer-Protein Interactions with Back-Scattering Interferometry
Analytical Chemistry
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Keith Henry, Hideki Iwamoto, Julie R. Field, Kristian Kaufmann, Eric S. Dawson, Miriam T. Jacobs, Chelsea Adams, Bruce Felts, Igor Zdravkovic, Vanessa Armstrong, Steven Combs, Ernesto Solis, Gary Rudnick, Sergei Y. Noskov, Louis J. DeFelice, Jens Meiler, and Randy D. Blakely
A Conserved Asparagine Residue in Transmembrane Segment 1 (TM1) of Serotonin Transporter Dictates Chloride-coupled Neurotransmitter Transport
Journal of Biological Chemistry
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Julia Koehler, Jens Meiler
Expanding the utility of NMR restraints with paramagnetic compounds: Background and practical aspects
Progress in Nuclear Magnetic Resonance Spectroscopy
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Bhave G, Chauder BA, Liu W, Dawson ES, Kadakia R, Nguyen TT, Lewis LM, Meiler J, Weaver CD, Satlin LM, Lindsley CW, Denton JS
Development of a selective small-molecule inhibitor of Kir1.1, the renal outer medullary potassium channel
Molecular Pharmacology
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Karen Gregory, Elizabeth Dong, Jens Meiler, Jeffrey Conn
Allosteric modulation of metabotropic glutamate receptors: Structural insights and therapeutic potential
Neuropharmacology
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Sarel J. Fleishman, Andrew Leaver-Fay, Jacob E. Corn, Eva-Maria Strauch, Sagar D. Khare, Nobuyasu Koga, Justin Ashworth, Paul Murphy, Florian Richter, Gordon Lemmon, Jens Meiler, David Baker
RosettaScripts: A Scripting Language Interface to the Rosetta Macromolecular Modeling Suite
PLoS ONE
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Kazmier K, Alexander NS, Meiler J, McHaourab HS
Algorithm for selection of optimized EPR distance restraints for de novo protein structure determination
Journal of Structural Biology
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Hirst SJ, Alexander N, McHaourab HS, Meiler J
RosettaEPR: an integrated tool for protein structure determination from sparse EPR data
Journal of Structural Biology
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Nils Woetzel, Steffen Lindert, Phoebe L. Stewart, Jens Meiler
BCL::EM-Fit: Rigid body fitting of atomic structures into density maps using geometric hashing and real space refinement
Journal of Structural Biology
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Sam DeLuca, Brent Dorr, and Jens Meiler
Design of native-like proteins through an exposure-dependent environment potential.
Biochemistry
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Andrew Morin, Kristian W. Kaufmann, Carie Fortenberry, Joel M. Harp, Laura S. Mizoue, Jens Meiler
Computational design of an endo-1,4-β-xylanase ligand binding site
Protein Engineering Design and Selection
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Edward W. Lowe, Mariusz Butkiewicz, Matthew Spellings, Albert Omlor, and Jens Meiler
Comparative Analysis of Machine Learning Techniques for the Prediction of LogP
Computational Intelligence in Bioinformatics and Computational Biology (CIBCB), IEEE Symposium
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Leaver-Fay A, Tyka M, Lewis SM, Lange OF, Thompson J, Jacak R, Kaufman K, Renfrew PD, Smith CA, Sheffler W, Davis IW, Cooper S, Treuille A, Mandell DJ, Richter F, Ban YE, Fleishman SJ, Corn JE, Kim DE, Lyskov S, Berrondo M, Mentzer S, Popovi Z, Havranek JJ, Karanicolas J, Das R, Meiler J, Kortemme T, Gray JJ, Kuhlman B, Baker D, Bradley P.
ROSETTA3: An Object-Oriented Software Suite for the Simulation and Design of Macromolecules
Methods in Enzymology
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Kaufmann K, Shen N, Mizoue L, Meiler J
A physical model for PDZ-domain/peptide interactions
J. Mol. Model.
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Nathan Alexander, Nils Woetzel, Jens Meiler
Bcl::Cluster: A method for clustering biological molecules coupled with visualization in the Pymol Molecular Graphics System
IEEE Conference
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Edward W. Lowe, Jr., Nils Woetzel, Jens Meiler
Poster: GPU-accelerated artificial neural network for QSAR modeling
IEEE Conference
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Nils Woetzel, Edward W. Lowe, Jr., Jens Meiler
Poster: GPU-accelerated rigid body fitting of atomic structures into electron density maps
IEEE Conference
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E. W. Lowe, M. Butkiewicz, M. Spellings, A. Omlor and J. Meiler
Comparative Analysis of Machine Learning Techniques for the Prediction of LogP
IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology